Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
Identifieur interne : 000168 ( France/Analysis ); précédent : 000167; suivant : 000169Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
Auteurs : Ming Fang ; Wencke-Maria Zeisberg ; Ciaran Condon [France] ; Vasily Ogryzko [France] ; Antoine Danchin ; Undine MecholdSource :
- Nucleic Acids Research [ 0305-1048 ] ; 2009.
Descripteurs français
- KwdFr :
- MESH :
- enzymologie : Bacillus subtilis.
- génétique : Bacillus subtilis, Ribonucléases.
- métabolisme : ADN, ARN, Oligoribonucléotides, Ribonucléases.
- ARN, Mutation, Oligoribonucléotides, Phylogénie, Ribonucléases, Test de complémentation.
English descriptors
- KwdEn :
- Bacillus subtilis (enzymology), Bacillus subtilis (genetics), DNA (metabolism), Genetic Complementation Test, Mutation, Oligoribonucleotides (chemistry), Oligoribonucleotides (metabolism), Phylogeny, RNA (chemistry), RNA (metabolism), Ribonucleases (classification), Ribonucleases (genetics), Ribonucleases (metabolism).
- MESH :
- chemical , chemistry : Oligoribonucleotides, RNA.
- chemical , classification : Ribonucleases.
- chemical , genetics : Ribonucleases.
- chemical , metabolism : DNA, Oligoribonucleotides, RNA, Ribonucleases.
- enzymology : Bacillus subtilis.
- genetics : Bacillus subtilis.
- Genetic Complementation Test, Mutation, Phylogeny.
Abstract
Url:
DOI: 10.1093/nar/gkp527
PubMed: 19553197
PubMed Central: 2731908
Affiliations:
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- to stream Main, to step Exploration: 002804
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Links to Exploration step
PMC:2731908Le document en format XML
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Génétique des Génomes Bactériens, 75724 Paris Cedex 15,</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author><author><name sortKey="Mechold, Undine" sort="Mechold, Undine" uniqKey="Mechold U" first="Undine" last="Mechold">Undine Mechold</name><affiliation><nlm:aff id="AFF1">Institut Pasteur, URA 2171, Unité de Génétique des Génomes Bactériens, 75724 Paris Cedex 15,</nlm:aff><wicri:noCountry code="subfield">75724 Paris Cedex 15</wicri:noCountry></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2009">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacillus subtilis (enzymology)</term><term>Bacillus subtilis (genetics)</term><term>DNA (metabolism)</term><term>Genetic Complementation Test</term><term>Mutation</term><term>Oligoribonucleotides (chemistry)</term><term>Oligoribonucleotides (metabolism)</term><term>Phylogeny</term><term>RNA (chemistry)</term><term>RNA (metabolism)</term><term>Ribonucleases (classification)</term><term>Ribonucleases (genetics)</term><term>Ribonucleases (metabolism)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN (métabolisme)</term><term>ARN ()</term><term>ARN (métabolisme)</term><term>Bacillus subtilis (enzymologie)</term><term>Bacillus subtilis (génétique)</term><term>Mutation</term><term>Oligoribonucléotides ()</term><term>Oligoribonucléotides (métabolisme)</term><term>Phylogénie</term><term>Ribonucléases ()</term><term>Ribonucléases (génétique)</term><term>Ribonucléases (métabolisme)</term><term>Test de complémentation</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Oligoribonucleotides</term><term>RNA</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Ribonucleases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Ribonucleases</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA</term><term>Oligoribonucleotides</term><term>RNA</term><term>Ribonucleases</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Bacillus subtilis</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Bacillus subtilis</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Bacillus subtilis</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Bacillus subtilis</term><term>Ribonucléases</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ADN</term><term>ARN</term><term>Oligoribonucléotides</term><term>Ribonucléases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genetic Complementation Test</term><term>Mutation</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ARN</term><term>Mutation</term><term>Oligoribonucléotides</term><term>Phylogénie</term><term>Ribonucléases</term><term>Test de complémentation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Escherichia coli</italic> possesses only one essential oligoribonuclease (Orn), an enzyme that can degrade oligoribonucleotides of five residues and shorter in length (nanoRNA). Firmicutes including <italic>Bacillus subtilis</italic> do not have an Orn homolog. We had previously identified YtqI (NrnA) as functional analog of Orn in <italic>B. subtilis</italic>. Screening a genomic library from <italic>B. subtilis</italic> for genes that can complement a conditional <italic>orn</italic> mutant, we identify here YngD (NrnB) as a second nanoRNase in <italic>B. subtilis</italic>. Like NrnA, NrnB is a member of the DHH/DHHA1 protein family of phosphoesterases. NrnB degrades nanoRNA 5-mers <italic>in vitro</italic> similarily to Orn. Low expression levels of NrnB are sufficient for <italic>orn</italic> complementation. YhaM, a known RNase present in <italic>B. subtilis</italic>, degrades nanoRNA efficiently <italic>in vitro</italic> but requires high levels of expression for only partial complementation of the <italic>orn<sup>–</sup></italic> strain. A triple mutant (<italic>nrnA</italic><sup>–</sup>, <italic>nrnB</italic><sup>–</sup>, <italic>yhaM</italic><sup>–</sup>) in <italic>B. subtilis</italic> is viable and shows almost no impairment in growth. Lastly, RNase J1 seems also to have some 5′-to-3′ exoribonuclease activity on nanoRNA and thus can potentially finish degradation of RNA. We conclude that, unlike in <italic>E. coli</italic>, degradation of nanoRNA is performed in a redundant fashion in <italic>B. subtilis</italic>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Condon, C" uniqKey="Condon C">C Condon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cheng, Zf" uniqKey="Cheng Z">ZF Cheng</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amblar, M" uniqKey="Amblar M">M Amblar</name></author><author><name sortKey="Barbas, A" uniqKey="Barbas A">A Barbas</name></author><author><name sortKey="Fialho, Am" uniqKey="Fialho A">AM Fialho</name></author><author><name sortKey="Arraiano, Cm" uniqKey="Arraiano C">CM Arraiano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amblar, M" uniqKey="Amblar M">M Amblar</name></author><author><name sortKey="Barbas, A" uniqKey="Barbas A">A Barbas</name></author><author><name sortKey="Gomez Puertas, P" uniqKey="Gomez Puertas P">P Gomez-Puertas</name></author><author><name sortKey="Arraiano, Cm" uniqKey="Arraiano C">CM Arraiano</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vincent, Ha" uniqKey="Vincent H">HA Vincent</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mechold, U" uniqKey="Mechold U">U Mechold</name></author><author><name sortKey="Fang, G" uniqKey="Fang G">G Fang</name></author><author><name sortKey="Ngo, S" uniqKey="Ngo S">S Ngo</name></author><author><name sortKey="Ogryzko, V" uniqKey="Ogryzko V">V Ogryzko</name></author><author><name sortKey="Danchin, A" uniqKey="Danchin A">A Danchin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ghosh, S" uniqKey="Ghosh S">S Ghosh</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yu, D" uniqKey="Yu D">D Yu</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author><author><name sortKey="Zhu, L" uniqKey="Zhu L">L Zhu</name></author><author><name sortKey="Deutscher, Mp" uniqKey="Deutscher M">MP Deutscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mathy, N" uniqKey="Mathy N">N Mathy</name></author><author><name sortKey="Benard, L" uniqKey="Benard L">L Benard</name></author><author><name sortKey="Pellegrini, O" uniqKey="Pellegrini O">O Pellegrini</name></author><author><name sortKey="Daou, R" uniqKey="Daou R">R Daou</name></author><author><name sortKey="Wen, T" 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Anderson</name></author><author><name sortKey="Derbyshire, Mk" uniqKey="Derbyshire M">MK Derbyshire</name></author><author><name sortKey="Deweese Scott, C" uniqKey="Deweese Scott C">C DeWeese-Scott</name></author><author><name sortKey="Gonzales, Nr" uniqKey="Gonzales N">NR Gonzales</name></author><author><name sortKey="Gwadz, M" uniqKey="Gwadz M">M Gwadz</name></author><author><name sortKey="Hao, L" uniqKey="Hao L">L Hao</name></author><author><name sortKey="He, S" uniqKey="He S">S He</name></author><author><name sortKey="Hurwitz, Di" uniqKey="Hurwitz D">DI Hurwitz</name></author><author><name sortKey="Jackson, Jd" uniqKey="Jackson J">JD Jackson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Noirot Gros, Mf" uniqKey="Noirot Gros M">MF Noirot-Gros</name></author><author><name sortKey="Dervyn, E" uniqKey="Dervyn E">E Dervyn</name></author><author><name sortKey="Wu, Lj" uniqKey="Wu L">LJ Wu</name></author><author><name sortKey="Mervelet, P" uniqKey="Mervelet P">P Mervelet</name></author><author><name sortKey="Errington, J" uniqKey="Errington J">J Errington</name></author><author><name sortKey="Ehrlich, Sd" uniqKey="Ehrlich S">SD Ehrlich</name></author><author><name sortKey="Noirot, P" uniqKey="Noirot P">P Noirot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deikus, G" uniqKey="Deikus G">G Deikus</name></author><author><name sortKey="Condon, C" uniqKey="Condon C">C Condon</name></author><author><name sortKey="Bechhofer, Dh" uniqKey="Bechhofer D">DH Bechhofer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mader, U" uniqKey="Mader U">U Mader</name></author><author><name sortKey="Zig, L" uniqKey="Zig L">L Zig</name></author><author><name sortKey="Kretschmer, J" uniqKey="Kretschmer J">J Kretschmer</name></author><author><name sortKey="Homuth, G" uniqKey="Homuth G">G Homuth</name></author><author><name sortKey="Putzer, H" uniqKey="Putzer H">H 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D">D Belin</name></author><author><name sortKey="Carson, Mj" uniqKey="Carson M">MJ Carson</name></author><author><name sortKey="Beckwith, J" uniqKey="Beckwith J">J Beckwith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Petit, Ma" uniqKey="Petit M">MA Petit</name></author><author><name sortKey="Dervyn, E" uniqKey="Dervyn E">E Dervyn</name></author><author><name sortKey="Rose, M" uniqKey="Rose M">M Rose</name></author><author><name sortKey="Entian, Kd" uniqKey="Entian K">KD Entian</name></author><author><name sortKey="Mcgovern, S" uniqKey="Mcgovern S">S McGovern</name></author><author><name sortKey="Ehrlich, Sd" uniqKey="Ehrlich S">SD Ehrlich</name></author><author><name sortKey="Bruand, C" uniqKey="Bruand C">C Bruand</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vagner, V" uniqKey="Vagner V">V Vagner</name></author><author><name sortKey="Dervyn, E" uniqKey="Dervyn E">E Dervyn</name></author><author><name sortKey="Ehrlich, Sd" uniqKey="Ehrlich S">SD Ehrlich</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sullivan, Ma" uniqKey="Sullivan M">MA Sullivan</name></author><author><name sortKey="Yasbin, Re" uniqKey="Yasbin R">RE Yasbin</name></author><author><name sortKey="Young, Fe" uniqKey="Young F">FE Young</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>France</li></country><region><li>Île-de-France</li></region><settlement><li>Paris</li><li>Villejuif</li></settlement></list><tree><noCountry><name sortKey="Danchin, Antoine" sort="Danchin, Antoine" uniqKey="Danchin A" first="Antoine" last="Danchin">Antoine Danchin</name><name sortKey="Fang, Ming" sort="Fang, Ming" uniqKey="Fang M" first="Ming" last="Fang">Ming Fang</name><name sortKey="Mechold, Undine" sort="Mechold, Undine" uniqKey="Mechold U" first="Undine" last="Mechold">Undine Mechold</name><name sortKey="Zeisberg, Wencke Maria" sort="Zeisberg, Wencke Maria" uniqKey="Zeisberg W" first="Wencke-Maria" last="Zeisberg">Wencke-Maria Zeisberg</name></noCountry><country name="France"><region name="Île-de-France"><name sortKey="Condon, Ciaran" sort="Condon, Ciaran" uniqKey="Condon C" first="Ciaran" last="Condon">Ciaran Condon</name></region><name sortKey="Ogryzko, Vasily" sort="Ogryzko, Vasily" uniqKey="Ogryzko V" first="Vasily" last="Ogryzko">Vasily Ogryzko</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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